STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT93382.1Aspartate racemase; Pfam match to PF01177.18 Asp_Glu_race; draft locus tag CAMGR0001_2170. (230 aa)    
Predicted Functional Partners:
AKT93281.1
Aspartate racemase; Pfam match to PF01177.18 Asp_Glu_race; draft locus tag CAMGR0001_0473; Belongs to the aspartate/glutamate racemases family.
  
  
 
0.928
pyrB
Aspartate carbamoyltransferase, catalytic subunit; Pfam matches to PF02729.17 OTCace_N, and to PF00185.20 OTCace; draft locus tag CAMGR0001_1584; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
     
 0.905
aspA
Aspartate ammonia-lyase; Pfam matches to PF00206.16 Lyase_1, and to PF10415.5 FumaraseC_C; draft locus tag CAMGR0001_1050.
    
  0.903
ansB
Asparaginase II; Bifunctional; Pfam match to PF00710.16 Asparaginase; draft locus tag CAMGR0001_0068.
    
  0.900
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
     
  0.900
AKT91868.1
Asparaginase family protein; Pfam match to PF01112.14 Asparaginase_2; draft locus tag CAMGR0001_2576.
     
  0.900
aspB
Aspartate aminotransferase, aminotransferase, classes I and II; Pfam match to PF00155.17 Aminotran_1_2; draft locus tag CAMGR0001_0815.
     
  0.900
argG
Argininosuccinate synthase; Pfam match to PF00764.15 Arginosuc_synth; draft locus tag CAMGR0001_0769; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
     
  0.900
AKT93386.1
L-asparaginase, type II; Pfam match to PF00710.16 Asparaginase; draft locus tag CAMGR0001_2176.
    
  0.900
panD
Aspartate 1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.
     
  0.800
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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