STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttdBL-tartrate dehydratase, subunit beta; Pfam match to PF05683.8 Fumerase_C; draft locus tag CAMGR0001_2178. (203 aa)    
Predicted Functional Partners:
ttdA
L-tartrate dehydratase, subunit alpha; Pfam match to PF05681.10 Fumerase; draft locus tag CAMGR0001_2179.
 
 0.999
AKT93437.1
Tartrate dehydratase/fumarate hydratase, alpha subunit; Pfam match to PF05681.10 Fumerase; draft locus tag CAMGR0001_2245.
 
 0.979
mdh
Malate dehydrogenase, NAD-dependent; Pfam matches to PF00056.19 Ldh_1_N, and to PF02866.14 Ldh_1_C; draft locus tag CAMGR0001_0943; Belongs to the LDH/MDH superfamily.
  
 
 0.945
pycB
Pyruvate carboxylase, subunit B; Pfam matches to PF02436.14 PYC_OADA, and to PF00364.18 Biotin_lipoyl, and to PF00682.15 HMGL-like; draft locus tag CAMGR0001_0046.
    
 0.890
mez
Malate oxidoreductase; Pfam matches to PF00390.15 malic, and to PF03949.11 Malic_M; draft locus tag CAMGR0001_2708.
 
 
 0.849
fumB
Tartrate dehydratase/fumarate hydratase, beta subunit; Pfam match to PF05683.8 Fumerase_C; draft locus tag CAMGR0001_2246.
  
  
 
0.831
pckA
Phosphoenolpyruvate carboxykinase (ATP); Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA.
   
 
 0.819
pycA
Pyruvate carboxylase, subunit A; Pfam matches to PF02786.13 CPSase_L_D2, and to PF00289.18 CPSase_L_chain, and to PF02785.15 Biotin_carb_C; draft locus tag CAMGR0001_0759.
     
 0.811
AKT93390.1
Hypothetical membrane protein (DUF2809 domain); Pfam match to PF10990.4 DUF2809; draft locus tag CAMGR0001_2180.
       0.796
por
Pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric; Pfam matches to PF01855.15 POR_N, and to PF01558.14 POR, and to PF10371.5 EKR, and to PF12838.3 Fer4_7, and to PF02775.17 TPP_enzyme_C; draft locus tag CAMGR0001_2171.
     
 0.653
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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