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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT93390.1Hypothetical membrane protein (DUF2809 domain); Pfam match to PF10990.4 DUF2809; draft locus tag CAMGR0001_2180. (153 aa)    
Predicted Functional Partners:
ttdB
L-tartrate dehydratase, subunit beta; Pfam match to PF05683.8 Fumerase_C; draft locus tag CAMGR0001_2178.
       0.796
ttdA
L-tartrate dehydratase, subunit alpha; Pfam match to PF05681.10 Fumerase; draft locus tag CAMGR0001_2179.
       0.796
AKT93391.1
NCAIR mutase (PurE)-related protein; Pfam match to PF00731.16 AIRC; draft locus tag CAMGR0001_2181.
       0.626
AKT93392.1
ATP-utilizing enzyme (PP-loop superfamily); Pfam match to PF01171.16 ATP_bind_3; draft locus tag CAMGR0001_2182.
       0.624
AKT93393.1
Putative protein (DUF111 domain); Pfam match to PF01969.13 DUF111; draft locus tag CAMGR0001_2183; Belongs to the LarC family.
       0.624
AKT93394.1
Putative protein (DUF2088 domain); Pfam match to PF09861.5 DUF2088; draft locus tag CAMGR0001_2184.
       0.618
AKT92235.1
Inner membrane protein, CreD family; Pfam match to PF06123.8 CreD; draft locus tag CAMGR0001_1444.
 
     0.442
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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