STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKT93424.1Sel1 domain repeat-containing protein; Hydrolyzes 6-aminopenicillinic acid and 7- aminocephalosporanic acid (ACA) derivatives. (277 aa)    
Predicted Functional Partners:
AKT93426.1
Cytochrome c nitrite reductase, NrfD subunit; Pfam match to PF03916.10 NrfD; draft locus tag CAMGR0001_2228.
       0.779
AKT93425.1
Cytochrome c biogenesis protein; Pfam matches to PF01578.16 Cytochrom_C_asm, and to PF05140.10 ResB, and to PF05140.10 ResB; draft locus tag CAMGR0001_2227.
       0.768
AKT93427.1
Cytochrome c nitrite reductase, NrfC subunit; Pfam match to PF13247.2 Fer4_11; draft locus tag CAMGR0001_2229.
       0.736
AKT93418.1
Hypothetical protein; Draft locus tag CAMGR0001_2220.
       0.729
AKT93419.1
Putative membrane protein; Draft locus tag CAMGR0001_2221.
       0.729
AKT93421.1
ABC transporter, permease protein; Pfam match to PF02687.17 FtsX; draft locus tag CAMGR0001_2223.
       0.729
AKT93428.1
FKBP-type peptidyl-prolyl cis-trans isomerase; Pfam matches to PF01346.14 FKBP_N, and to PF00254.24 FKBP_C; draft locus tag CAMGR0001_2230.
   
 
 0.718
AKT93423.1
NosL family protein; Pfam matches to PF05573.8 NosL, and to PF05573.8 NosL; draft locus tag CAMGR0001_2225.
       0.715
AKT93422.1
Hypothetical protein; Draft locus tag CAMGR0001_2224.
       0.696
AKT93420.1
ABC transporter, ATP-binding protein; Pfam match to PF00005.23 ABC_tran; draft locus tag CAMGR0001_2222.
       0.675
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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