STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT93437.1Tartrate dehydratase/fumarate hydratase, alpha subunit; Pfam match to PF05681.10 Fumerase; draft locus tag CAMGR0001_2245. (281 aa)    
Predicted Functional Partners:
fumB
Tartrate dehydratase/fumarate hydratase, beta subunit; Pfam match to PF05683.8 Fumerase_C; draft locus tag CAMGR0001_2246.
 
 0.999
ttdB
L-tartrate dehydratase, subunit beta; Pfam match to PF05683.8 Fumerase_C; draft locus tag CAMGR0001_2178.
 
 0.979
mdh
Malate dehydrogenase, NAD-dependent; Pfam matches to PF00056.19 Ldh_1_N, and to PF02866.14 Ldh_1_C; draft locus tag CAMGR0001_0943; Belongs to the LDH/MDH superfamily.
  
 
 0.950
frdA
Fumarate reductase, flavoprotein subunit; Pfam matches to PF00890.20 FAD_binding_2, and to PF02910.16 Succ_DH_flav_C; draft locus tag CAMGR0001_1421.
  
 
 0.924
frdB
Fumarate reductase, iron-sulfur subunit; Pfam matches to PF13085.2 Fer2_3, and to PF13183.2 Fer4_8; draft locus tag CAMGR0001_1420; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 
 0.924
mfrB
Methylmenaquinol:fumarate reductase, MfrB subunit; Pfam matches to PF13085.2 Fer2_3, and to PF13183.2 Fer4_8; draft locus tag CAMGR0001_0883.
  
 
 0.924
mfrA
Methylmenaquinol:fumarate reductase, MfrA subunit; Pfam matches to PF00890.20 FAD_binding_2, and to PF02910.16 Succ_DH_flav_C; draft locus tag CAMGR0001_0882.
  
 
 0.924
frdC
Fumarate reductase, cytochrome b subunit; Pfam match to PF01127.18 Sdh_cyt; draft locus tag CAMGR0001_1422.
  
 
 0.922
mez
Malate oxidoreductase; Pfam matches to PF00390.15 malic, and to PF03949.11 Malic_M; draft locus tag CAMGR0001_2708.
  
 
 0.919
mfrE
Methylmenaquinol:fumarate reductase, MfrE subunit; Pfam matches to PF02754.12 CCG, and to PF02754.12 CCG; draft locus tag CAMGR0001_0884.
    
  0.902
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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