STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT93536.1SAM-dependent methyltransferase; Pfam match to PF12847.3 Methyltransf_18; draft locus tag CAMGR0001_0212. (304 aa)    
Predicted Functional Partners:
AKT93538.1
Putative PAS sensor-containing diguanylate phosphodiesterase; Pfam matches to PF00563.16 EAL, and to PF00989.20 PAS; draft locus tag CAMGR0001_0214.
  
  
 0.788
AKT93537.1
Cytochrome c peroxidase; Pfam match to PF03150.10 CCP_MauG; draft locus tag CAMGR0001_0213.
       0.773
AKT92378.1
Putative membrane protein; Pfam match to PF01618.12 MotA_ExbB; draft locus tag CAMGR0001_1228.
  
 
   0.565
ZnuB
Metal ion ABC transporter, membrane protein; Pfam match to PF00950.13 ABC-3; draft locus tag CAMGR0001_0209.
       0.547
ZnuC
Metal ion ABC transporter, ATP-binding protein; Pfam match to PF00005.23 ABC_tran; draft locus tag CAMGR0001_0211.
       0.546
AKT93114.1
Transcriptional regulator, Fur family; Pfam match to PF08279.8 HTH_11; draft locus tag CAMGR0001_2836; Belongs to the Fur family.
 
     0.483
trxC
Putative periplasmic thioredoxin; Draft locus tag CAMGR0001_1189.
  
   0.410
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.