STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKT93556.1Putative lipoprotein; Draft locus tag CAMGR0001_0242 and CAMGR0001_0243. (195 aa)    
Predicted Functional Partners:
gss
Glutathionylspermidine amidase / glutathionylspermidine synthetase; Bifunctional; Pfam match to PF03738.10 GSP_synth; draft locus tag CAMGR0001_0240.
 
   0.882
AKT93557.1
Hypothetical protein; Draft locus tag CAMGR0001_0244.
       0.800
AKT91601.1
Tetratricopeptide repeat protein; Pfam match to PF13432.2 TPR_16; draft locus tag CAMGR0001_0038.
  
     0.764
AKT92573.1
Putative protein (DUF3971 domain); Pfam matches to PF13109.2 AsmA_1, and to PF13116.2 DUF3971; draft locus tag CAMGR0001_0945.
  
     0.753
AKT92349.1
DHH-type phosphohydrolase; Draft locus tag CAMGR0001_1268.
  
     0.734
hemD
Uroporphyrinogen III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
     0.719
cccA
Periplasmic monoheme cytochrome c553; Pfam match to PF00034.17 Cytochrom_C; draft locus tag CAMGR0001_1357.
  
     0.716
lptA
Putative lipooligosaccharide transport system, periplasmic component (LptA family); Pfam match to PF03968.10 OstA; draft locus tag CAMGR0001_2360.
  
     0.703
AKT91894.1
Putative lipooligosaccharide transport system, permease component (LptG family); Pfam match to PF03739.10 YjgP_YjgQ; draft locus tag CAMGR0001_2542.
  
     0.702
trxC
Putative periplasmic thioredoxin; Draft locus tag CAMGR0001_1189.
  
     0.693
Your Current Organism:
Campylobacter gracilis
NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738
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