rpsT protein (Campylobacter gracilis) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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[Homology]

Score

rpsT

30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. (90 aa)

Predicted Functional Partners:

rpsO

0.988

rpsI

0.986

rpsU

0.986

rpsR

0.986

rpsP

0.986

rpmF

0.986

rpsJ

0.985

rplM

0.985

rpmH

0.985

rpmB

0.985

Your Current Organism:

Campylobacter gracilis

NCBI taxonomy Id: 824
Other names: ATCC 33236, Bacteroides gracilis, C. gracilis, CCUG 27720, DSM 19528, JCM 8538, NCTC 12738

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
rplM	rpmB	CGRAC_0363	CGRAC_1688	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Pfam match to PF00830.15 Ribosomal_L28.	0.982
rplM	rpmF	CGRAC_0363	CGRAC_1840	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L32; Draft locus tag CAMGR0001_0508; Belongs to the bacterial ribosomal protein bL32 family.	0.981
rplM	rpmH	CGRAC_0363	CGRAC_1426	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	50S ribosomal protein L34; Draft locus tag CAMGR0001_1945; Belongs to the bacterial ribosomal protein bL34 family.	0.976
rplM	rpsI	CGRAC_0363	CGRAC_0364	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Pfam match to PF00380.15 Ribosomal_S9; draft locus tag CAMGR0001_2624; Belongs to the universal ribosomal protein uS9 family.	0.998
rplM	rpsJ	CGRAC_0363	CGRAC_0167	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.987
rplM	rpsO	CGRAC_0363	CGRAC_0901	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.990
rplM	rpsP	CGRAC_0363	CGRAC_1716	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Pfam match to PF00886.15 Ribosomal_S16; draft locus tag CAMGR0001_2863; Belongs to the bacterial ribosomal protein bS16 family.	0.985
rplM	rpsR	CGRAC_0363	CGRAC_1464	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.984
rplM	rpsT	CGRAC_0363	CGRAC_2181	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.985
rplM	rpsU	CGRAC_0363	CGRAC_0502	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	30S ribosomal protein S21; Draft locus tag CAMGR0001_1871; Belongs to the bacterial ribosomal protein bS21 family.	0.979
rpmB	rplM	CGRAC_1688	CGRAC_0363	Pfam match to PF00830.15 Ribosomal_L28.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.982
rpmB	rpmF	CGRAC_1688	CGRAC_1840	Pfam match to PF00830.15 Ribosomal_L28.	50S ribosomal protein L32; Draft locus tag CAMGR0001_0508; Belongs to the bacterial ribosomal protein bL32 family.	0.985
rpmB	rpmH	CGRAC_1688	CGRAC_1426	Pfam match to PF00830.15 Ribosomal_L28.	50S ribosomal protein L34; Draft locus tag CAMGR0001_1945; Belongs to the bacterial ribosomal protein bL34 family.	0.983
rpmB	rpsI	CGRAC_1688	CGRAC_0364	Pfam match to PF00830.15 Ribosomal_L28.	Pfam match to PF00380.15 Ribosomal_S9; draft locus tag CAMGR0001_2624; Belongs to the universal ribosomal protein uS9 family.	0.981
rpmB	rpsJ	CGRAC_1688	CGRAC_0167	Pfam match to PF00830.15 Ribosomal_L28.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.980
rpmB	rpsO	CGRAC_1688	CGRAC_0901	Pfam match to PF00830.15 Ribosomal_L28.	30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.984
rpmB	rpsP	CGRAC_1688	CGRAC_1716	Pfam match to PF00830.15 Ribosomal_L28.	Pfam match to PF00886.15 Ribosomal_S16; draft locus tag CAMGR0001_2863; Belongs to the bacterial ribosomal protein bS16 family.	0.980
rpmB	rpsR	CGRAC_1688	CGRAC_1464	Pfam match to PF00830.15 Ribosomal_L28.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.984
rpmB	rpsT	CGRAC_1688	CGRAC_2181	Pfam match to PF00830.15 Ribosomal_L28.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.985
rpmB	rpsU	CGRAC_1688	CGRAC_0502	Pfam match to PF00830.15 Ribosomal_L28.	30S ribosomal protein S21; Draft locus tag CAMGR0001_1871; Belongs to the bacterial ribosomal protein bS21 family.	0.984