Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CYJ10_05365 | CYJ10_33065 | GCA_000974605_04096 | GCA_000974605_01455 | Unannotated protein. | Unannotated protein. | 0.493 |
CYJ10_33065 | CYJ10_05365 | GCA_000974605_01455 | GCA_000974605_04096 | Unannotated protein. | Unannotated protein. | 0.493 |
CYJ10_33065 | GCA_000974605_04574 | GCA_000974605_01455 | GCA_000974605_04574 | Unannotated protein. | Unannotated protein. | 0.486 |
CYJ10_33065 | rlmD | GCA_000974605_01455 | GCA_000974605_01416 | Unannotated protein. | Unannotated protein; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.710 |
CYJ10_33065 | rlmE | GCA_000974605_01455 | GCA_000974605_00059 | Unannotated protein. | Unannotated protein; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | 0.732 |
CYJ10_33065 | rplJ | GCA_000974605_01455 | GCA_000974605_04043 | Unannotated protein. | Unannotated protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.477 |
CYJ10_33065 | rpmD | GCA_000974605_01455 | GCA_000974605_04133 | Unannotated protein. | Unannotated protein. | 0.773 |
CYJ10_33065 | rsmA | GCA_000974605_01455 | GCA_000974605_04974 | Unannotated protein. | Unannotated protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.553 |
CYJ10_33065 | trmB | GCA_000974605_01455 | GCA_000974605_06237 | Unannotated protein. | Unannotated protein; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.769 |
CYJ10_33065 | truB | GCA_000974605_01455 | GCA_000974605_02595 | Unannotated protein. | Unannotated protein; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.524 |
CYJ10_33065 | ttcA | GCA_000974605_01455 | GCA_000974605_04181 | Unannotated protein. | Unannotated protein; Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system. | 0.476 |
GCA_000974605_04574 | CYJ10_33065 | GCA_000974605_04574 | GCA_000974605_01455 | Unannotated protein. | Unannotated protein. | 0.486 |
rlmD | CYJ10_33065 | GCA_000974605_01416 | GCA_000974605_01455 | Unannotated protein; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | Unannotated protein. | 0.710 |
rlmD | rlmE | GCA_000974605_01416 | GCA_000974605_00059 | Unannotated protein; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | Unannotated protein; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | 0.430 |
rlmD | rplJ | GCA_000974605_01416 | GCA_000974605_04043 | Unannotated protein; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | Unannotated protein; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.417 |
rlmD | rsmA | GCA_000974605_01416 | GCA_000974605_04974 | Unannotated protein; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | Unannotated protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.519 |
rlmD | trmB | GCA_000974605_01416 | GCA_000974605_06237 | Unannotated protein; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | Unannotated protein; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.664 |
rlmD | truB | GCA_000974605_01416 | GCA_000974605_02595 | Unannotated protein; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | Unannotated protein; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.460 |
rlmE | CYJ10_33065 | GCA_000974605_00059 | GCA_000974605_01455 | Unannotated protein; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | Unannotated protein. | 0.732 |
rlmE | rlmD | GCA_000974605_00059 | GCA_000974605_01416 | Unannotated protein; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | Unannotated protein; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. | 0.430 |
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