STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFY70669.1PFAM: Pentapeptide repeats (8 copies); COGs: COG1357 Uncharacterized low-complexity protein; InterPro IPR001646; KEGG: ava:Ava_4910 pentapeptide repeat-containing protein; PFAM: Pentapeptide repeat; SPTR: Pentapeptide repeat protein. (273 aa)    
Predicted Functional Partners:
AFY71153.1
PFAM: Pentapeptide repeats (8 copies); COGs: COG1357 Uncharacterized low-complexity protein; InterPro IPR001646; KEGG: cyn:Cyan7425_1609 pentapeptide repeat protein; PFAM: Pentapeptide repeat; SPTR: Pentapeptide repeat-containing protein.
  
   
 0.723
AFY70670.1
Microcompartments protein; PFAM: BMC domain; InterPro IPR000249; KEGG: tel:tlr0311 hypothetical protein; PFAM: Microcompartment protein, bacteria; SMART: Microcompartment protein, bacteria; SPTR: Tlr0311 protein.
       0.610
AFY68481.1
PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP, putative; COGs: COG0251 Putative translation initiation inhibitor yjgF family; InterPro IPR006175:IPR006056; KEGG: syp:SYNPCC7002_A0617 endoribonuclease L-PSP, putative; PFAM: Endoribonuclease L-PSP; SPTR: Endoribonuclease L-PSP, putative; TIGRFAM: YjgF-like protein.
 
      0.524
Your Current Organism:
Pseudanabaena sp. PCC7367
NCBI taxonomy Id: 82654
Other names: Calotaxis gracile PCC 7367, P. sp. PCC 7367, Pseudanabaena PCC7367, Pseudanabaena sp. PCC 7367
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.