STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP95651.1Hypothetical protein. (328 aa)    
Predicted Functional Partners:
SFP95631.1
Transcriptional regulator, PadR family.
 
    0.899
cinA
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
 0.886
SFQ28391.1
Hypothetical protein.
  
     0.507
SFQ23974.1
Hypothetical protein.
  
     0.497
SFP95610.1
Hypothetical protein.
       0.480
SFQ45968.1
Two component transcriptional regulator, LuxR family.
   
 0.479
SFQ33316.1
Hypothetical protein.
  
     0.476
SFP95589.1
Oligopeptidase F. Metallo peptidase. MEROPS family M03B.
       0.434
SFQ40612.1
Hypothetical protein.
  
     0.426
Your Current Organism:
Desemzia incerta
NCBI taxonomy Id: 82801
Other names: ATCC 8363, Bacterium incertum, Brevibacterium incertum, CCUG 38799, CIP 104227, CIP 106501, D. incerta, DSM 20581, IFO 12145, NBRC 12145, NCIB 9892, NCIB:9892, NCIMB 9892
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.