STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF36085.1Cyclophilin-like. (115 aa)    
Predicted Functional Partners:
SHG12062.1
Hypothetical protein.
 
     0.899
SHG12090.1
Hypothetical protein.
 
    0.590
SHF63679.1
Flavodoxin.
 
     0.557
SHG04446.1
4-carboxymuconolactone decarboxylase.
 
     0.531
SHF63480.1
Flavodoxin.
 
    0.527
SHF56139.1
Hypothetical protein.
 
     0.522
SHF36115.1
2-iminobutanoate/2-iminopropanoate deaminase.
       0.488
SHF63761.1
Flavodoxin.
 
    0.467
SHG00461.1
Pyrimidine reductase, riboflavin biosynthesis.
 
     0.442
SHF96222.1
Cupin domain protein.
 
     0.435
Your Current Organism:
Trichococcus flocculiformis
NCBI taxonomy Id: 82803
Other names: ATCC 51221, DSM 2094, T. flocculiformis, strain Echt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.