STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF39804.1Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (314 aa)    
Predicted Functional Partners:
SHF39852.1
Oligopeptide transport system permease protein.
 
 0.999
SHF39879.1
Oligopeptide transport system permease protein.
 
 0.996
SHF39828.1
Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
0.988
SHF93585.1
Peptide/nickel transport system permease protein.
 
 0.988
SHF93556.1
Peptide/nickel transport system permease protein.
 
 0.983
SHF39771.1
Oligopeptide transport system substrate-binding protein.
 
 
 0.972
SHF93496.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
0.959
SHF39933.1
Oligopeptide transport system substrate-binding protein.
 
 
 0.949
SHF94811.1
Oligopeptide transport system substrate-binding protein.
 
 
 0.948
SHF18785.1
Oligopeptide transport system substrate-binding protein.
 
 
 0.902
Your Current Organism:
Trichococcus flocculiformis
NCBI taxonomy Id: 82803
Other names: ATCC 51221, DSM 2094, T. flocculiformis, strain Echt
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