STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF40618.1Uncharacterized protein YozE, UPF0346 family; Belongs to the UPF0346 family. (74 aa)    
Predicted Functional Partners:
SHF40644.1
Uncharacterized protein YpmS.
 
   
 0.851
deoD
Purine-nucleoside phosphorylase.
       0.754
SHF40546.1
Carboxyl-terminal processing protease; Belongs to the peptidase S41A family.
       0.708
SHF52725.1
Conserved hypothetical integral membrane protein.
  
     0.657
SHF41671.1
Tetratricopeptide repeat-containing protein.
  
     0.626
SHF59136.1
Lipoteichoic acid synthase.
  
     0.549
SHF40672.1
Hemolysin III.
       0.548
SHF86510.1
Lysophospholipase L1.
  
  
 0.544
SHF49636.1
Competence protein CoiA.
  
     0.519
SHF42113.1
Riboflavin biosynthesis RibT protein.
  
     0.510
Your Current Organism:
Trichococcus flocculiformis
NCBI taxonomy Id: 82803
Other names: ATCC 51221, DSM 2094, T. flocculiformis, strain Echt
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