STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF67022.1Amidohydrolase. (388 aa)    
Predicted Functional Partners:
SHF36815.1
Glutamate synthase (ferredoxin).
    
  0.876
SHF67048.1
2-methylcitrate dehydratase PrpD.
 
    0.815
SHF66995.1
Adenylosuccinate lyase.
  
    0.779
SHF67072.1
Amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-).
  
    0.611
SHF67102.1
Putative redox protein.
       0.601
Your Current Organism:
Trichococcus flocculiformis
NCBI taxonomy Id: 82803
Other names: ATCC 51221, DSM 2094, T. flocculiformis, strain Echt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.