STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF82874.1Type III restriction enzyme. (978 aa)    
Predicted Functional Partners:
SHF82848.1
Adenine-specific DNA-methyltransferase.
 
  
 0.960
SHF82899.1
Hypothetical protein.
 
   
 0.943
SHF82929.1
Superfamily II DNA or RNA helicase, SNF2 family.
 
    0.927
SHG15862.1
Adenine-specific DNA-methyltransferase.
 
  
 0.861
SHG15798.1
Superfamily II DNA or RNA helicase, SNF2 family.
 
    0.805
SHG15832.1
Protein of unknown function.
 
     0.780
SHF82818.1
Hypothetical protein.
       0.723
Your Current Organism:
Trichococcus flocculiformis
NCBI taxonomy Id: 82803
Other names: ATCC 51221, DSM 2094, T. flocculiformis, strain Echt
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.