STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF87493.1Nuclease-related domain-containing protein. (226 aa)    
Predicted Functional Partners:
SHF26646.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
   0.786
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.664
SHF26846.1
Transcriptional regulator TrmB.
   
    0.600
SHF59228.1
Single-strand DNA-binding protein.
  
 
 0.516
SHF91499.1
Single-strand binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
  
 
 0.516
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.510
SHF68024.1
Transcriptional regulator, MarR family.
  
   
 0.481
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.458
SHF36815.1
Glutamate synthase (ferredoxin).
  
    0.412
SHF24771.1
Ribonuclease HI.
    
 
 0.408
Your Current Organism:
Trichococcus flocculiformis
NCBI taxonomy Id: 82803
Other names: ATCC 51221, DSM 2094, T. flocculiformis, strain Echt
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.