Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHF98808.1 | SHG00692.1 | SAMN04488048_12025 | SAMN04488048_12120 | Heat induced stress protein YflT. | Magnesium transporter. | 0.632 |
SHG00692.1 | SHF98808.1 | SAMN04488048_12120 | SAMN04488048_12025 | Magnesium transporter. | Heat induced stress protein YflT. | 0.632 |
SHG00692.1 | SHG00727.1 | SAMN04488048_12120 | SAMN04488048_12121 | Magnesium transporter. | Hypothetical protein. | 0.534 |
SHG00692.1 | lepA | SAMN04488048_12120 | SAMN04488048_10454 | Magnesium transporter. | GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | 0.410 |
SHG00727.1 | SHG00692.1 | SAMN04488048_12121 | SAMN04488048_12120 | Hypothetical protein. | Magnesium transporter. | 0.534 |
lepA | SHG00692.1 | SAMN04488048_10454 | SAMN04488048_12120 | GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner. | Magnesium transporter. | 0.410 |