Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SET94714.1Magnesium chelatase family protein. (371 aa)    
Predicted Functional Partners:
SET89720.1
comF family protein.
 
  
 0.824
SET34699.1
DNA processing protein.
 
 0.816
SET58675.1
Competence protein ComEC.
 
  
 0.779
SES77338.1
Putative endonuclease; Belongs to the UPF0102 family.
 
    0.700
SET94746.1
Hypothetical protein.
       0.636
SET59846.1
Oxygen-dependent protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
     
  0.578
ruvC
Holliday junction endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
  
   
 0.491
SET94691.1
Gliding motility-associated lipoprotein GldB.
       0.465
SET94774.1
SH3 domain-containing protein; Manually curated.
       0.400
Your Current Organism:
Hymenobacter actinosclerus
NCBI taxonomy Id: 82805
Other names: CCUG 39621, CIP 106628, DSM 15310, H. actinosclerus, Hymenobacter actinosclerus Collins et al. 2000
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