STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hcpA_1Major exported protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa)    
Predicted Functional Partners:
AKJ41626.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.936
hcpA_2
Hcp family T6SS protein CtsH1; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.918
AKJ41628.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.896
AKJ41625.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.876
AKJ42099.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.858
AKJ43191.1
Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.858
AKJ42100.1
EvpB family type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.838
AKJ43190.1
EvpB family type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.837
AKJ41617.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.793
AKJ41623.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.765
Your Current Organism:
Pragia fontium
NCBI taxonomy Id: 82985
Other names: ATCC 49100, CCUG 18073, CDC 963-84, CIP 103791, CNCTC Eb11/82, DRL 20125, DSM 5563, IP 20125, LMG 7875, LMG:7875, NCTC 12283, P. fontium, strain HG16
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.