STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKJ42329.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa)    
Predicted Functional Partners:
tyrP
Tyrosine transporter TyrP; Tyrosine specific permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.680
AKJ41676.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.653
AKJ43164.1
Transporter; Uncharacterized member of the APC superfamily of amino acid transporters; unknown function; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.616
yjjB
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.612
AKJ42648.1
HCP oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.610
AKJ41451.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0231 family.
  
     0.606
menC
O-succinylbenzoate synthase; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB).
  
     0.605
ychN
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.596
AKJ42944.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.577
yecN
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.574
Your Current Organism:
Pragia fontium
NCBI taxonomy Id: 82985
Other names: ATCC 49100, CCUG 18073, CDC 963-84, CIP 103791, CNCTC Eb11/82, DRL 20125, DSM 5563, IP 20125, LMG 7875, LMG:7875, NCTC 12283, P. fontium, strain HG16
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.