STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CR62_01015Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (97 aa)    
Predicted Functional Partners:
CR62_01020
Hydrogenase isoenzymes formation protein HypD; Necessary for the synthesis of all three hydrogenase isoenzymes; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.999
CR62_01025
Carbamoyl dehydratase HypE; Hydrogenase isoenzymes formation protein; involved in the formation of the cyanate group of the large subunit of the hydrogenase; catalyzes the formation of thiocyanate from thiocarbamate; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.997
CR62_01010
Hydrogenase nickel incorporation protein HypB; GTP hydrolase involved in nickel liganding into hydrogenases; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.990
CR62_01005
Hydrogenase nickel incorporation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.962
CR62_00945
Carbamoyl phosphate phosphatase; Carbamoyltransferase; involved in the formation of the cyanate group of hydrogenase; catalyzes the formation of carbamoyladenylate from carbamoylphosphate and then transfers the carbamoyl group to HypE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.910
hycE
Hydrogenase 3 large subunit; Formate hydrogenlyase subunit 5; HycBCDEFG is part of the formate hydrogenlyase system which is involved in the cleaving of formate to dihydrogen and carbon dioxide; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.791
CR62_01030
Transcriptional regulator; Regulates the expression of formate dehydrogenase H and hydrogenase-3 structural genes; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.579
CR62_01000
Formate hydrogenlyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.470
fliM
Flagellar motor switch protein FliM; With FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.455
CR62_23235
Flagellar hook-basal body protein FliE; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.455
Your Current Organism:
Serratia grimesii
NCBI taxonomy Id: 82995
Other names: ATCC 14460, CCUG 15721, CIP 103361, DSM 30063, IFO 13537, JCM 5910, LMG 7883, LMG:7883, NBRC 13537, NCTC 11543, NRRL B-4271, S. grimesii
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