STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CR62_02225Translation initiation factor Sui1; Involved in start site selection during the initiation of translation; Derived by automated computational analysis using gene prediction method: Protein Homology. (108 aa)    
Predicted Functional Partners:
CR62_06875
Translation initiation factor IF-1; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.993
CR62_23720
selenocysteinyl-tRNA-specific translation factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.989
CR62_18575
30S ribosomal protein S3; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.967
CR62_18560
30S ribosomal protein S17; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.955
rpsJ
30S ribosomal protein S10; NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.951
CR62_11075
30S ribosomal protein S15; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.945
rpsN
30S ribosomal protein S14; Located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.942
CR62_15890
30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.941
CR62_18585
30S ribosomal protein S19; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.941
CR62_15885
30S ribosomal protein S7; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.939
Your Current Organism:
Serratia grimesii
NCBI taxonomy Id: 82995
Other names: ATCC 14460, CCUG 15721, CIP 103361, DSM 30063, IFO 13537, JCM 5910, LMG 7883, LMG:7883, NBRC 13537, NCTC 11543, NRRL B-4271, S. grimesii
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