STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CR62_05220Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (183 aa)    
Predicted Functional Partners:
CR62_07320
Protein PhlB; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.967
CR62_09225
Nucleoside-triphosphate diphosphatase; HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.787
CR62_05215
NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.652
CR62_05065
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.509
CR62_14250
Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.491
CR62_03650
S-formylglutathione hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.455
CR62_05225
GSH-dependent disulfide bond oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.455
copA
Copper-transporting ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.421
CR62_03725
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.413
CR62_03985
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.408
Your Current Organism:
Serratia grimesii
NCBI taxonomy Id: 82995
Other names: ATCC 14460, CCUG 15721, CIP 103361, DSM 30063, IFO 13537, JCM 5910, LMG 7883, LMG:7883, NBRC 13537, NCTC 11543, NRRL B-4271, S. grimesii
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