STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CR62_08410Serine endoprotease DegQ; Derived by automated computational analysis using gene prediction method: Protein Homology. (456 aa)    
Predicted Functional Partners:
CR62_23880
Membrane protein; OmpA is believed to be a porin, involved in diffusion of nonspecific small solutes across the outer membrane. It is the most abundant integral protein of the outer membrane of E. coli, and it is known to play a role as a phage receptor, a mediator of F-factor dependent conjugation, and in maintaining the structural shape of the outer membrane; 3a; II*; G; d; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.814
CR62_07295
anti-RNA polymerase sigma factor SigE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.797
CR62_10345
4-alpha-L-fucosyltransferase; Catalyzes the synthesis of a lipid-linked intermediate involved in ECA synthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.762
glpK
Converts glycerol and ADP to glycerol-3-phosphate and ADP; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.762
CR62_07320
Protein PhlB; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.743
CR62_08405
Serine endoprotease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.603
CR62_05005
Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.584
CR62_11070
Polynucleotide phosphorylase/polyadenylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.565
rplI
50S ribosomal protein L9; In Escherichia coli this protein is wrapped around the base of the L1 stalk; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
   0.564
CR62_20990
Protease; Degrades small peptides; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.551
Your Current Organism:
Serratia grimesii
NCBI taxonomy Id: 82995
Other names: ATCC 14460, CCUG 15721, CIP 103361, DSM 30063, IFO 13537, JCM 5910, LMG 7883, LMG:7883, NBRC 13537, NCTC 11543, NRRL B-4271, S. grimesii
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