STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CR62_20255GDP-mannose pyrophosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)    
Predicted Functional Partners:
CR62_04300
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.836
CR62_16260
NAD synthetase; NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.818
CR62_05780
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
  0.782
CR62_00900
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.779
CR62_08465
Aerobic respiration control sensor protein ArcB; Sensor-regulator protein which regulates the expression of many genes in response to respiratory growth conditions including anaerobic repression of the arc modulon; hybrid sensory histidine kinase in two-component regulatory system with ArcA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.779
cpsB
Mannose-1-phosphate guanyltransferase; Capsular polysaccharide colanic acid biosynthesis protein; catalyzes the formation of GDP-mannose from GTP and alpha-D-mannose 1-phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.773
CR62_21705
5-methyltetrahydrofolate--homocysteine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.753
CR62_01045
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.745
CR62_04080
Ribose-phosphate pyrophosphokinase; Catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.721
CR62_13980
Phosphopentomutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.710
Your Current Organism:
Serratia grimesii
NCBI taxonomy Id: 82995
Other names: ATCC 14460, CCUG 15721, CIP 103361, DSM 30063, IFO 13537, JCM 5910, LMG 7883, LMG:7883, NBRC 13537, NCTC 11543, NRRL B-4271, S. grimesii
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