STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ANJ94186.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)    
Predicted Functional Partners:
ppsE_1
6-deoxyerythronolide-B synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.982
ANJ93026.1
Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.979
hemL_2
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.977
ANJ96267.1
AMP-dependent synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.967
mbtB
Glutamate racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.964
lgrD_3
Condensation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.934
tycC_2
Bacitracin synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ATP-dependent AMP-binding enzyme family.
 
0.925
dhbF_1
Condensation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.917
lgrD_5
Thioester reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.878
ANJ94187.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.805
Your Current Organism:
Serratia plymuthica
NCBI taxonomy Id: 82996
Other names: ATCC 183, Bacterium plymuthicum, CCUG 14509, CIP 103239, DSM 4540, LMG 7886, LMG:7886, NBRC 102599, NCTC 12961, S. plymuthica, Serratia sp. DBLH13
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