Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMS38991.1Iron-binding protein; Pfam:pfam06902 Divergent 4Fe-4S mono-cluster. (212 aa)    
Predicted Functional Partners:
AMS40551.1
Acetyltransferase; Pfam:pfam14542 GCN5-related N-acetyl-transferase.
  
  
 0.898
AMS41641.1
Hypothetical protein.
  
     0.460
AMS38990.1
Hydantoinase; Pfam:pfam01968 Hydantoinase/oxoprolinase.
       0.438
AMS42522.1
Type VI secretion protein; Pfam:pfam05638 Protein of unknown function (DUF796).
  
     0.423
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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