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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS38999.1Pfam:pfam05114 Protein of unknown function (DUF692); Belongs to the UPF0276 family. (295 aa)    
Predicted Functional Partners:
AMS39000.1
Pfam:pfam09836 Uncharacterized protein conserved in bacteria (DUF2063).
  
 0.995
AMS38998.1
Membrane protein; Pfam:pfam10048 Predicted integral membrane protein (DUF2282).
 
  
 0.984
AMS39001.1
Putative membrane protein; Pfam:pfam07681 DoxX.
 
  
 0.976
AMS38996.1
Pfam:pfam06532 Protein of unknown function (DUF1109).
 
   
 0.695
AMS38997.1
RNA polymerase sigma factor, sigma-70 family; Pfam:pfam04542 Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.683
AMS42146.1
Hypothetical protein; Pfam:pfam00122 E1-E2 ATPase.
   
    0.652
AMS44024.1
Conjugal transfer ATPase TrbE; Pfam:pfam12846 AAA-like domain.
   
    0.580
msrQ
Hypothetical protein; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the [...]
 
  
 0.577
AMS44207.1
Hypothetical protein; Pfam:pfam00535 Glycosyl transferase family 2.
  
    0.550
AMS39002.1
Hypothetical protein; Pfam:pfam00583 Acetyltransferase (GNAT) family.
  
    0.537
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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