Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMS39000.1Pfam:pfam09836 Uncharacterized protein conserved in bacteria (DUF2063). (254 aa)    
Predicted Functional Partners:
AMS38999.1
Pfam:pfam05114 Protein of unknown function (DUF692); Belongs to the UPF0276 family.
  
 0.997
AMS39001.1
Putative membrane protein; Pfam:pfam07681 DoxX.
 
  
 0.978
AMS38998.1
Membrane protein; Pfam:pfam10048 Predicted integral membrane protein (DUF2282).
 
  
 0.973
AMS38996.1
Pfam:pfam06532 Protein of unknown function (DUF1109).
 
   
 0.751
AMS38997.1
RNA polymerase sigma factor, sigma-70 family; Pfam:pfam04542 Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.671
AMS41373.1
Hypothetical protein.
   
    0.539
AMS41696.1
Pfam:pfam10908 Protein of unknown function (DUF2778).
   
    0.539
AMS39002.1
Hypothetical protein; Pfam:pfam00583 Acetyltransferase (GNAT) family.
       0.512
AMS39626.1
DoxX family protein; Pfam:pfam07681 DoxX.
  
  
 0.511
AMS43141.1
DoxX family protein; Pfam:pfam07681 DoxX.
  
  
 0.511
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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