STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39014.1TRAP transporter, 4TM/12TM fusion protein; Pfam:pfam06808 DctM-like transporters. (703 aa)    
Predicted Functional Partners:
AMS39013.1
C4-dicarboxylate ABC transporter.
 
 
 0.994
AMS39015.1
Hypothetical protein; Pfam:pfam08905 Domain of unknown function (DUF1850).
 
    0.958
AMS43262.1
Tripartite ATP-independent periplasmic transporter solute receptor, DctP family; Pfam:pfam03480 Bacterial extracellular solute-binding protein, family 7.
  
     0.643
AMS40083.1
TRAP transporter-DctP subunit; Pfam:pfam03480 Bacterial extracellular solute-binding protein, family 7.
  
     0.632
AMS40080.1
Hypothetical protein; Pfam:pfam06808 DctM-like transporters.
  
     0.524
AMS44158.1
Pfam:pfam14023 Protein of unknown function (DUF4239).
  
  
 0.434
AMS40078.1
Hypothetical protein; Pfam:pfam03480 Bacterial extracellular solute-binding protein, family 7.
  
     0.410
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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