STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39044.1Pfam:pfam02021 Uncharacterized protein family UPF0102; Belongs to the UPF0102 family. (123 aa)    
Predicted Functional Partners:
rsmI
16S rRNA methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.804
AMS40725.1
Amidophosphoribosyltransferase; Pfam:pfam00156 Phosphoribosyl transferase domain.
 
    0.679
AMS42775.1
Pfam:pfam02481 DNA recombination-mediator protein A.
 
    0.597
AMS39661.1
ATPase AAA; Pfam:pfam01078 Magnesium chelatase, subunit ChlI.
 
  
 0.575
AMS39045.1
Glutathione peroxidase; Pfam:pfam11730 Protein of unknown function (DUF3297).
       0.506
AMS41866.1
Biotin; Pfam:pfam03099 Biotin/lipoate A/B protein ligase family.
 
     0.492
AMS43733.1
Diguanylate cyclase; Pfam:pfam00563 EAL domain.
  
    0.485
AMS39042.1
Transporter; Pfam:pfam00892 EamA-like transporter family.
       0.463
AMS41010.1
Hypothetical protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
  
    0.442
AMS39479.1
Hypothetical protein; Pfam:pfam00563 EAL domain.
  
    0.433
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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