STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39089.1Membrane protein; Pfam:pfam01988 VIT family. (233 aa)    
Predicted Functional Partners:
AMS39086.1
Pfam:pfam00175 Oxidoreductase NAD-binding domain.
 
   
 0.862
AMS39085.1
Tat pathway signal protein; Pfam:pfam10029 Predicted periplasmic protein (DUF2271).
 
     0.835
AMS39088.1
Haloacid dehalogenase; Pfam:pfam00122 E1-E2 ATPase.
 
  
 0.830
AMS39087.1
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
 
    0.818
AMS39084.1
Hypothetical protein; Pfam:pfam04889 Cwf15/Cwc15 cell cycle control protein.
       0.637
AMS39092.1
Efflux transporter, RND family, MFP subunit; Pfam:pfam12700 HlyD family secretion protein.
       0.456
AMS39091.1
Pfam:pfam02687 FtsX-like permease family.
       0.446
AMS39090.1
Pfam:pfam00005 ABC transporter.
       0.443
AMS39093.1
Cytochrome B561.
       0.410
AMS43373.1
Pfam:pfam01545 Cation efflux family.
 
 
 
 0.400
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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