STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39091.1Pfam:pfam02687 FtsX-like permease family. (788 aa)    
Predicted Functional Partners:
AMS39090.1
Pfam:pfam00005 ABC transporter.
 
  
 0.958
AMS39092.1
Efflux transporter, RND family, MFP subunit; Pfam:pfam12700 HlyD family secretion protein.
 
    0.948
AMS39093.1
Cytochrome B561.
 
     0.574
AMS39087.1
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
       0.458
AMS39089.1
Membrane protein; Pfam:pfam01988 VIT family.
       0.446
AMS39086.1
Pfam:pfam00175 Oxidoreductase NAD-binding domain.
       0.443
AMS39088.1
Haloacid dehalogenase; Pfam:pfam00122 E1-E2 ATPase.
       0.443
AMS39085.1
Tat pathway signal protein; Pfam:pfam10029 Predicted periplasmic protein (DUF2271).
       0.435
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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