STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39107.1Pfam:pfam01042 Endoribonuclease L-PSP. (116 aa)    
Predicted Functional Partners:
AMS39108.1
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Pfam:pfam03328 HpcH/HpaI aldolase/citrate lyase family; Belongs to the HpcH/HpaI aldolase family.
       0.777
AMS39109.1
Hypothetical protein.
       0.768
AMS39110.1
Cupin 2 conserved barrel domain protein; Pfam:pfam07883 Cupin domain.
  
    0.690
AMS39106.1
Hypothetical protein; Pfam:pfam01408 Oxidoreductase family, NAD-binding Rossmann fold.
       0.520
AMS39105.1
Hypothetical protein; Pfam:pfam01261 Xylose isomerase-like TIM barrel.
       0.518
AMS39104.1
Amidase; Pfam:pfam01425 Amidase.
       0.515
yabJ_5
TdcF; Pfam:pfam01042 Endoribonuclease L-PSP.
 
   
 0.437
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.