Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMS39116.1Pfam:pfam00593 TonB dependent receptor. (768 aa)    
Predicted Functional Partners:
AMS39113.1
Hypothetical protein; Pfam:pfam03544 Gram-negative bacterial TonB protein C-terminal.
 
 
 
 0.873
AMS39117.1
Pfam:pfam09981 Uncharacterized protein conserved in bacteria (DUF2218).
 
     0.825
AMS40329.1
TolA, TolA protein.
   
 
 0.751
AMS39115.1
Anti-FecI sigma factor, FecR; Pfam:pfam04773 FecR protein.
 
   
 0.722
AMS41652.1
Pfam:pfam11924 Protein of unknown function (DUF3442).
 
 
 
 0.663
AMS43171.1
Pfam:pfam11924 Protein of unknown function (DUF3442).
 
 
 
 0.646
AMS39123.1
Hypothetical protein; Pfam:pfam01497 Periplasmic binding protein.
 
     0.640
AMS39125.1
Hypothetical protein; Pfam:pfam01032 FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
     0.626
AMS39126.1
Hypothetical protein; Pfam:pfam00005 ABC transporter.
 
     0.626
AMS43020.1
Porin; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
    
 
 0.609
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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