STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39134.1ABC-type bacteriocin/lantibiotic exporter; Pfam:pfam00005 ABC transporter. (565 aa)    
Predicted Functional Partners:
AMS39608.1
Pfam:pfam04954 Siderophore-interacting protein.
   
   0.871
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
     0.718
AMS43558.1
Pfam:pfam00529 HlyD family secretion protein.
 
 0.669
AMS39637.1
Hypothetical protein; Pfam:pfam00005 ABC transporter.
 
 
 
0.666
AMS44325.1
Pfam:pfam00005 ABC transporter.
 
 
 
0.659
AMS42247.1
Transporter; Pfam:pfam02321 Outer membrane efflux protein.
  
  
 0.644
AMS39029.1
Pfam:pfam13437 HlyD family secretion protein.
  
 
 0.626
AMS41081.1
Hypothetical protein; Pfam:pfam00529 HlyD family secretion protein.
 
 
 0.626
AMS43129.1
Membrane protein; Pfam:pfam00529 HlyD family secretion protein.
  
 
 0.626
AMS43238.1
ABC transporter permease; Pfam:pfam13437 HlyD family secretion protein.
  
 
 0.626
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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