STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMS39190.1Hypothetical protein. (109 aa)    
Predicted Functional Partners:
AMS39187.1
Hypothetical protein; Pfam:pfam06835 Lipopolysaccharide-assembly, LptC-related.
 
     0.790
AMS41245.1
Flagellar export protein FliJ.
  
     0.768
AMS43147.1
Hypothetical protein; Pfam:pfam10276 Zinc-finger domain.
  
     0.767
AMS44204.1
Membrane protein.
  
     0.767
AMS42326.1
Hypothetical protein.
  
     0.747
AMS43749.1
Pfam:pfam06776 Invasion associated locus B (IalB) protein.
  
     0.742
AMS43486.1
Pfam:pfam09539 Protein of unknown function (DUF2385).
  
     0.741
AMS39191.1
Pfam:pfam02423 Ornithine cyclodeaminase/mu-crystallin family.
       0.729
ihfB
Integration host factor subunit beta; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
       0.722
AMS43603.1
Hypothetical protein.
  
     0.716
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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