STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39194.1DNA-binding protein; Pfam:pfam08279 HTH domain. (230 aa)    
Predicted Functional Partners:
AMS39193.1
Drug:proton antiporter; Pfam:pfam12681 Glyoxalase-like domain.
     0.956
AMS39192.1
Hypothetical protein; Pfam:pfam01878 EVE domain; Belongs to the UPF0310 family.
 
     0.762
AMS39195.1
SAM-dependent methlyltransferase; Pfam:pfam10672 S-adenosylmethionine-dependent methyltransferase; Belongs to the methyltransferase superfamily.
     
 0.532
AMS39196.1
Pfam:pfam00588 SpoU rRNA Methylase family; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.527
AMS40679.1
Glutathione S-transferase-like protein; Pfam:pfam13417 Glutathione S-transferase, N-terminal domain.
    
 0.493
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 
 
 0.456
AMS42845.1
AraC family transcriptional regulator; Pfam:pfam06445 GyrI-like small molecule binding domain.
 
    0.452
AMS40239.1
AraC family transcriptional regulator; Pfam:pfam06445 GyrI-like small molecule binding domain.
 
    0.424
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.