STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39233.1Pfam:pfam01475 Ferric uptake regulator family; Belongs to the Fur family. (153 aa)    
Predicted Functional Partners:
AMS43567.1
Peroxidase; Pfam:pfam00578 AhpC/TSA family.
  
  
 0.651
AMS43050.1
Pfam:pfam00480 ROK family.
  
  
 0.634
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.625
AMS42930.1
CoA-binding protein; Pfam:pfam13380 CoA binding domain.
  
    0.584
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
 
 
 0.549
AMS39234.1
L-glyceraldehyde 3-phosphate reductase; Pfam:pfam00248 Aldo/keto reductase family.
       0.511
AMS40947.1
Glutamate synthase; Pfam:pfam01645 Conserved region in glutamate synthase.
     
 0.496
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.488
AMS39246.1
Manganese/iron transporter ATP-binding protein; Pfam:pfam00005 ABC transporter.
  
  
 0.487
AMS43081.1
Pfam:pfam00005 ABC transporter.
  
  
 0.487
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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