Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
AMS39262.1Hypothetical protein; Pfam:pfam00082 Subtilase family. (502 aa)    
Predicted Functional Partners:
AMS39260.1
RNA polymerase sigma factor; Pfam:pfam04542 Sigma-70 region 2; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.870
AMS39261.1
Anti-sigma factor.
     
 0.831
AMS39425.1
Hypothetical protein.
 
 
 0.523
AMS42146.1
Hypothetical protein; Pfam:pfam00122 E1-E2 ATPase.
   
 
 0.509
AMS39259.1
Aldehyde dehydrogenase; Pfam:pfam14518 Iron-containing redox enzyme.
       0.476
AMS43380.1
Pfam:pfam00069 Protein kinase domain.
 
 
 
 0.463
AMS39959.1
Cell division protein FtsK; Pfam:pfam01580 FtsK/SpoIIIE family.
  
 
 0.455
AMS41732.1
Pfam:pfam01098 Cell cycle protein; Belongs to the SEDS family.
   
   0.450
AMS41410.1
Metallophosphatase; Pfam:pfam09587 Bacterial capsule synthesis protein PGA_cap.
 
     0.423
AMS41373.1
Hypothetical protein.
 
  
 0.421
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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