STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39271.1Ferredoxin; Pfam:pfam00111 2Fe-2S iron-sulfur cluster binding domain. (97 aa)    
Predicted Functional Partners:
AMS39273.1
Ferredoxin.
 
    0.903
AMS39274.1
Aldehyde dehydrogenase; Pfam:pfam14518 Iron-containing redox enzyme.
 
     0.872
AMS39259.1
Aldehyde dehydrogenase; Pfam:pfam14518 Iron-containing redox enzyme.
 
     0.778
AMS39272.1
Hypothetical protein.
  
    0.771
AMS39258.1
CDP-alcohol phosphatidyltransferase; Pfam:pfam03928 Domain of unknown function (DUF336).
 
     0.702
AMS39269.1
Hypothetical protein; Pfam:pfam01925 Sulfite exporter TauE/SafE.
 
     0.658
AMS42320.1
Hypothetical protein; Pfam:pfam01592 NifU-like N terminal domain.
  
 0.651
AMS42862.1
Cysteine desulfarase; Pfam:pfam00266 Aminotransferase class-V.
  
 0.599
AMS39270.1
Hypothetical protein; Pfam:pfam00171 Aldehyde dehydrogenase family; Belongs to the aldehyde dehydrogenase family.
  
  
 0.578
AMS39268.1
Pfam:pfam02423 Ornithine cyclodeaminase/mu-crystallin family.
  
    0.576
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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