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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39300.1Site-specific recombinase XerD; Pfam:pfam00589 Phage integrase family; Belongs to the 'phage' integrase family. (448 aa)    
Predicted Functional Partners:
AMS40725.1
Amidophosphoribosyltransferase; Pfam:pfam00156 Phosphoribosyl transferase domain.
  
    0.492
AMS40667.1
Pfam:pfam02153 Prephenate dehydrogenase.
  
    0.461
AMS44009.1
Pfam:pfam11000 Protein of unknown function (DUF2840).
  
     0.451
AMS44007.1
DNA binding domain, excisionase family; Pfam:pfam12728 Helix-turn-helix domain.
 
   
 0.435
AMS44010.1
Conjugal transfer protein; Pfam:pfam10502 Signal peptidase, peptidase S26.
 
   
 0.422
AMS39299.1
Integrase; Pfam:pfam00665 Integrase core domain.
     
 0.418
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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