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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39309.1Pfam:pfam05443 ROS/MUCR transcriptional regulator protein. (145 aa)    
Predicted Functional Partners:
AMS40393.1
Pfam:pfam10073 Uncharacterized protein conserved in bacteria (DUF2312); Belongs to the UPF0335 family.
  
     0.597
AMS40672.1
Membrane protein; Pfam:pfam02698 DUF218 domain.
  
     0.597
AMS41771.1
Hypothetical protein; Pfam:pfam04386 Stringent starvation protein B.
  
     0.572
AMS39973.1
Hypothetical protein; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
  
     0.560
secE
Preprotein translocase subunit SecE; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation.
  
    0.558
AMS43432.1
Pfam:pfam04364 DNA polymerase III chi subunit, HolC.
  
     0.543
AMS39697.1
LuxR family transcriptional regulator; Pfam:pfam12705 PD-(D/E)XK nuclease superfamily.
  
     0.478
rpsU
Pfam:pfam01165 Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
     0.465
AMS41687.1
Glycosyltransferase; Pfam:pfam13231 Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.426
lptD
Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.425
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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