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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39323.1Hypothetical protein; Pfam:pfam03734 L,D-transpeptidase catalytic domain. (190 aa)    
Predicted Functional Partners:
AMS39324.1
Pilus assembly protein; Pfam:pfam13614 AAA domain.
       0.777
AMS39325.1
Pilus biosynthesis protein TadE.
       0.757
AMS39326.1
Pfam:pfam07811 TadE-like protein.
       0.757
AMS39327.1
Hypothetical protein; Pfam:pfam13400 Putative Flp pilus-assembly TadE/G-like.
       0.757
AMS39320.1
Pilus assembly protein TadC; Pfam:pfam00482 Type II secretion system (T2SS), protein F.
       0.709
AMS39321.1
Pilus assembly protein TadB; Pfam:pfam00482 Type II secretion system (T2SS), protein F.
       0.709
AMS39322.1
CpaF pilus assembly protein, ATPase CpaF; Pfam:pfam00437 Type II/IV secretion system protein.
       0.709
AMS43742.1
ErfK/YbiS/YcfS/YnhG family protein; Pfam:pfam03734 L,D-transpeptidase catalytic domain.
 
  
 0.679
AMS39634.1
Hypothetical protein; Pfam:pfam03411 Penicillin-insensitive murein endopeptidase.
  
     0.563
AMS40742.1
Hypothetical protein; Pfam:pfam03734 L,D-transpeptidase catalytic domain.
  
     0.518
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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