Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
AMS39338.1Hypothetical protein. (431 aa)    
Predicted Functional Partners:
AMS39320.1
Pilus assembly protein TadC; Pfam:pfam00482 Type II secretion system (T2SS), protein F.
 
    0.853
AMS39321.1
Pilus assembly protein TadB; Pfam:pfam00482 Type II secretion system (T2SS), protein F.
 
    0.842
AMS39330.1
Flp pilus assembly protein CpaB.
 
    0.793
AMS39324.1
Pilus assembly protein; Pfam:pfam13614 AAA domain.
 
    0.791
AMS44395.1
Pfam:pfam00482 Type II secretion system (T2SS), protein F.
 
    0.768
AMS44396.1
Pilus assembly protein; Pfam:pfam00482 Type II secretion system (T2SS), protein F.
 
    0.751
AMS39322.1
CpaF pilus assembly protein, ATPase CpaF; Pfam:pfam00437 Type II/IV secretion system protein.
 
     0.746
AMS44397.1
CpaF protein secretory protein kinase; Pfam:pfam00437 Type II/IV secretion system protein.
 
     0.687
AMS39329.1
Pilus assembly protein CpaC; Pfam:pfam00263 Bacterial type II and III secretion system protein; Belongs to the bacterial secretin family.
 
     0.680
AMS39337.1
Hypothetical protein; Pfam:pfam13414 TPR repeat.
 
     0.577
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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