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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39368.1Pfam:pfam06906 Protein of unknown function (DUF1272). (84 aa)    
Predicted Functional Partners:
ureA
Pfam:pfam00547 Urease, gamma subunit; Belongs to the urease gamma subunit family.
       0.788
ureD
Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
       0.752
ureB
Pfam:pfam00699 Urease beta subunit; Belongs to the urease beta subunit family.
       0.708
ureC
Pfam:pfam00449 Urease alpha-subunit, N-terminal domain.
       0.701
AMS39369.1
Pfam:pfam04955 HupE / UreJ protein.
       0.694
AMS39372.1
Putative isomerase; Pfam:pfam02567 Phenazine biosynthesis-like protein.
       0.608
AMS39365.1
Hypothetical protein.
       0.532
AMS39363.1
beta-ACP synthase; Pfam:pfam00109 Beta-ketoacyl synthase, N-terminal domain; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
       0.473
AMS39364.1
NodF.
       0.473
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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