Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMS39406.1Thiamine biosynthesis protein ApbE; Pfam:pfam02424 ApbE family. (293 aa)    
Predicted Functional Partners:
AMS39405.1
6-hydroxynicotinate reductase.
 
     0.956
AMS39407.1
Hypothetical protein; Pfam:pfam06684 Amino acid synthesis.
 
     0.956
AMS39404.1
Aldehyde oxidase; Pfam:pfam02738 Molybdopterin-binding domain of aldehyde dehydrogenase.
 
     0.941
AMS39408.1
HTH-type transcriptional repressor NicR; Pfam:pfam01047 MarR family.
 
     0.930
AMS39403.1
Xanthine dehydrogenase; Pfam:pfam00941 FAD binding domain in molybdopterin dehydrogenase.
 
     0.918
AMS39396.1
Hypothetical protein; Pfam:pfam13458 Periplasmic binding protein.
 
     0.598
AMS39402.1
Pfam:pfam00857 Isochorismatase family.
       0.497
AMS39395.1
Hypothetical protein.
 
     0.453
AMS39129.1
Homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.418
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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