STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39408.1HTH-type transcriptional repressor NicR; Pfam:pfam01047 MarR family. (142 aa)    
Predicted Functional Partners:
AMS39406.1
Thiamine biosynthesis protein ApbE; Pfam:pfam02424 ApbE family.
 
     0.931
AMS39405.1
6-hydroxynicotinate reductase.
 
     0.930
AMS39407.1
Hypothetical protein; Pfam:pfam06684 Amino acid synthesis.
 
     0.928
AMS39404.1
Aldehyde oxidase; Pfam:pfam02738 Molybdopterin-binding domain of aldehyde dehydrogenase.
 
     0.862
AMS39403.1
Xanthine dehydrogenase; Pfam:pfam00941 FAD binding domain in molybdopterin dehydrogenase.
 
    0.824
AMS39402.1
Pfam:pfam00857 Isochorismatase family.
       0.499
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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