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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AMS39437.1Hypothetical protein; Pfam:pfam03795 YCII-related domain. (124 aa)    
Predicted Functional Partners:
AMS39436.1
ECF subfamily RNA polymerase sigma-70 factor; Pfam:pfam04542 Sigma-70 region 2; Belongs to the sigma-70 factor family.
 
     0.949
AMS39016.1
RNA polymerase sigma70 factor; Pfam:pfam04542 Sigma-70 region 2; Belongs to the sigma-70 factor family.
 
     0.780
AMS42348.1
Putative sigma factor; Pfam:pfam04542 Sigma-70 region 2; Belongs to the sigma-70 factor family.
 
     0.773
AMS42349.1
Pfam:pfam03795 YCII-related domain.
 
    0.770
AMS42347.1
Hypothetical protein.
 
     0.608
AMS39438.1
Pfam:pfam00202 Aminotransferase class-III; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.501
Your Current Organism:
Aminobacter aminovorans
NCBI taxonomy Id: 83263
Other names: A. aminovorans, ATCC 23314, ATCC 29600, Aminobacter heintzii, CCUG 2081, CIP 106737, Chelatobacter heintzii, DSM 10368, DSM 7048, JCM 7852, KCTC 2477, LMG 2122, LMG:2122, NCCB 26039, NCIB 9039, NCIB:9039, NCIMB 9039, NCTC 10684, Pseudomonas aminovorans, VKM B-2058
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